Reduction of PerseusC -01 dataset:

msfile='13B-318.sb28648156.eb28960619.56716.05861162037.ms'

!cp -r final_caltables/ final_caltables_orig/

plotcal(caltable='final_caltables/fluxgaincal.g', xaxis='time',yaxis='amp',iteration='antenna')
plotcal(caltable='final_caltables/fluxgaincal.g', xaxis='time',yaxis='amp')
plotcal(caltable='final_caltables_orig/fluxgaincal.g', xaxis='time',yaxis='amp')

rm -rf orig.fluxcal orig_fluxcal.txt
fluxscale(vis=msfile,caltable='final_caltables_orig/fluxgaincal.g',fluxtable='orig.fluxcal', reference='0137+331=3C48',listfile='orig_fluxcal.txt')

rm -rf flagged.fluxcal edited_fluxcal.txt
fluxscale(vis=msfile,caltable='final_caltables/fluxgaincal.g',fluxtable='flagged.fluxcal', reference='0137+331=3C48',listfile='edited_fluxcal.txt')


plotcal(caltable='final_caltables/finalampgaincal.g', xaxis='time',yaxis='amp',iteration='antenna',plotrange=[-1,-1,0,2.0])
plotcal(caltable='final_caltables/finalphasegaincal.g', xaxis='time',yaxis='phase',iteration='antenna',plotrange=[-1,-1,-180.0,180.0])
plotcal(caltable='final_caltables/finalampgaincal.g', xaxis='freq',yaxis='amp',iteration='antenna',plotrange=[-1,-1,0,2.0])

flagdata(vis=msfile,mode='list', inpfile='additionalflags.txt')
flagdata(vis='final_caltables/finalampgaincal.g', mode='list', inpfile='gaintable_flags.txt')
flagdata(vis='final_caltables/finalphasegaincal.g', mode='list', inpfile='gaintable_flags.txt')

applycal(vis=msfile,gaintable=['final_caltables/finalampgaincal.g', 'final_caltables/finalphasegaincal.g'],applymode='flagonly')

split(vis=msfile,field='PerC13',outputvis='PerC13.ms', datacolumn='corrected')
split(vis=msfile,field='PerC29',outputvis='PerC29.ms', datacolumn='corrected')

mkdir /lustre/aoc/projects/perseus/sources-C/PerC13
mkdir /lustre/aoc/projects/perseus/sources-C/PerC29

mkdir /lustre/aoc/projects/perseus/sources-C/PerC13/A-array
mkdir /lustre/aoc/projects/perseus/sources-C/PerC29/A-array

mv PerC13.ms /lustre/aoc/projects/perseus/sources-C/PerC13/A-array
mv PerC29.ms /lustre/aoc/projects/perseus/sources-C/PerC29/A-array

cd /lustre/aoc/projects/perseus/sources-C/PerC13/A-array
clean(vis='PerC13.ms',imagename='PerC13.dirty.A.C.cont',field='',mode='mfs',spw='0~15', niter=000000,gain=0.1,threshold='0.025mJy',interactive=False,imsize=[8192,8192],cell=[0.1,0.1])
clean(vis='PerC13.ms',imagename='PerC13.dirty.A.C.high.cont',field='',mode='mfs',spw='8~15', niter=000000,gain=0.1,threshold='0.025mJy',interactive=False,imsize=[8192,8192],cell=[0.1,0.1])
clean(vis='PerC13.ms',imagename='PerC13.dirty.A.C.low.cont',field='',mode='mfs',spw='0~7', niter=000000,gain=0.1,threshold='0.025mJy',interactive=False,imsize=[8192,8192],cell=[0.1,0.1])

cd /lustre/aoc/projects/perseus/sources-C/PerC29/A-array
clean(vis='PerC29.ms',imagename='PerC29.dirty.A.C.cont',field='',mode='mfs',spw='0~15', niter=000000,gain=0.1,threshold='0.025mJy',interactive=False,imsize=[8192,8192],cell=[0.1,0.1])
clean(vis='PerC29.ms',imagename='PerC29.dirty.A.C.high.cont',field='',mode='mfs',spw='8~15', niter=000000,gain=0.1,threshold='0.025mJy',interactive=False,imsize=[8192,8192],cell=[0.1,0.1])
clean(vis='PerC29.ms',imagename='PerC29.dirty.A.C.low.cont',field='',mode='mfs',spw='0~7', niter=000000,gain=0.1,threshold='0.025mJy',interactive=False,imsize=[8192,8192],cell=[0.1,0.1])

additionalflags.txt:

mode='manual' antenna='ea19'

gaintable_flags.txt:

mode='manual' antenna='ea19'

* Set ALLOWTOPICVIEW = JohnTobin, VLAPerseusSurveyGroup
* Set ALLOWTOPICCHANGE = JohnTobin, VLAPerseusSurveyGroup

-- JohnTobin - 2014-03-04